2021
Arias-Orozco, P., Inklaar, M., Lanooij, J., Cebrián, R., & Kuipers, O. P. (2021). Functional Expression and Characterization of the Highly Promiscuous Lanthipeptide Synthetase SyncM, Enabling the Production of Lanthipeptides with a Broad Range of Ring Topologies. ACS Synthetic Biology, 10(10), 2579-2591. https://doi.org/10.1021/acssynbio.1c00224
Arias-Orozco, P., Yi, Y., Kuipers, O. P., & Stewart, F. J. (2021). Draft Genome Sequences of Four Bacterial Strains of Heterotrophic Alteromonas macleodii and Marinobacter, Isolated from a Nonaxenic Culture of Two Marine Synechococcus Strains. Microbiology Resource Announcements, 10(19), e00116-00121. https://doi.org/doi:10.1128/MRA.00116-21
Cavallo, F. M., Jordana, L., Friedrich, A. W., Glasner, C., & van Dijl, J. M. (2021). Bdellovibrio bacteriovorus: a potential ‘living antibiotic’ to control bacterial pathogens. Critical Reviews in Microbiology, 47(5), 630-646. https://doi.org/10.1080/1040841X.2021.1908956
Keskin, D., Zu, G., Forson, A. M., Tromp, L., Sjollema, J., & van Rijn, P. (2021). Nanogels: A novel approach in antimicrobial delivery systems and antimicrobial coatings. Bioactive Materials, 6(10), 3634-3657. https://doi.org/https://doi.org/10.1016/j.bioactmat.2021.03.004
Ribovski, L., de Jong, E., Mergel, O., Zu, G., Keskin, D., van Rijn, P., & Zuhorn, I. S. (2021). Low nanogel stiffness favors nanogel transcytosis across an in vitro blood–brain barrier. Nanomedicine: Nanotechnology, Biology and Medicine, 34, 102377. https://doi.org/https://doi.org/10.1016/j.nano.2021.102377
Kobauri, P., Szymanski, W., Cao, F., Thallmair, S., Marrink, S. J., Witte, M. D., Dekker, F. J., & Feringa, B. L. (2021). Biaryl sulfonamides as cisoid azosteres for photopharmacology [10.1039/D1CC00950H]. Chemical Communications, 57(34), 4126-4129. https://doi.org/10.1039/D1CC00950H
Kolarski, D., Miller, S., Oshima, T., Nagai, Y., Aoki, Y., Kobauri, P., Srivastava, A., Sugiyama, A., Amaike, K., Sato, A., Tama, F., Szymanski, W., Feringa, B. L., Itami, K., & Hirota, T. (2021). Photopharmacological Manipulation of Mammalian CRY1 for Regulation of the Circadian Clock. Journal of the American Chemical Society, 143(4), 2078-2087. https://doi.org/10.1021/jacs.0c12280
Lauxen, A. I., Kobauri, P., Wegener, M., Hansen, M. J., Galenkamp, N. S., Maglia, G., Szymanski, W., Feringa, B. L., & Kuipers, O. P. (2021). Mechanism of Resistance Development in E. coli against TCAT, a Trimethoprim-Based Photoswitchable Antibiotic. Pharmaceuticals, 14(5), 392. https://www.mdpi.com/1424-8247/14/5/392
Simeth, N. A., Kobayashi, S., Kobauri, P., Crespi, S., Szymanski, W., Nakatani, K., Dohno, C., & Feringa, B. L. (2021). Rational design of a photoswitchable DNA glue enabling high regulatory function and supramolecular chirality transfer [10.1039/D1SC02194J]. Chemical Science, 12(26), 9207-9220. https://doi.org/10.1039/D1SC02194J
Iacovelli, R., Mózsik, L., Bovenberg, R. A. L., & Driessen, A. J. M. (2021). Identification of a conserved N-terminal domain in the first module of ACV synthetases. MicrobiologyOpen, 10(1), e1145. https://doi.org/https://doi.org/10.1002/mbo3.1145
Mózsik, L., Hoekzema, M., de Kok, N. A. W., Bovenberg, R. A. L., Nygård, Y., & Driessen, A. J. M. (2021). CRISPR-based transcriptional activation tool for silent genes in filamentous fungi. Scientific Reports, 11(1), 1118. https://doi.org/10.1038/s41598-020-80864-3
Raineri, E. J. M., Altulea, D., & van Dijl, J. M. (2021). Staphylococcal trafficking and infection—from ‘nose to gut’ and back. FEMS Microbiology Reviews. https://doi.org/10.1093/femsre/fuab041
Wu, Y., Li, C., van der Mei, H. C., Busscher, H. J., & Ren, Y. (2021). Carbon Quantum Dots Derived from Different Carbon Sources for Antibacterial Applications. Antibiotics, 10(6), 623. https://www.mdpi.com/2079-6382/10/6/623
Wu, Y., Wei, H., van der Mei, H. C., de Vries, J., Busscher, H. J., & Ren, Y. (2021). Inheritance of physico-chemical properties and ROS generation by carbon quantum dots derived from pyrolytically carbonized bacterial sources. Materials Today Bio, 12, 100151. https://doi.org/https://doi.org/10.1016/j.mtbio.2021.100151
Paul, A., Huang, J., Han, Y., Yang, X., Vuković, L., Král, P., Zheng, L., & Herrmann, A. (2021). Photochemical control of bacterial gene expression based on trans encoded genetic switches [10.1039/D0SC05479H]. Chemical Science, 12(7), 2646-2654. https://doi.org/10.1039/D0SC05479H
Huo, S., Zhao, P., Shi, Z., Zou, M., Yang, X., Warszawik, E., Loznik, M., Göstl, R., & Herrmann, A. (2021). Mechanochemical bond scission for the activation of drugs. Nature Chemistry, 13(2), 131-139. https://doi.org/10.1038/s41557-020-00624-8
2020
Marinus, N., Tahiri, N., Duca, M., Mouthaan, L. M. C. M., Bianca, S., van den Noort, M., Poolman, B., Witte, M. D., & Minnaard, A. J. (2020). Stereoselective Protection-Free Modification of 3-Keto-saccharides. Organic Letters, 22(14), 5622-5626. https://doi.org/10.1021/acs.orglett.0c01986
Forson, A. M., van der Mei, H. C., & Sjollema, J. (2020). Impact of solid surface hydrophobicity and micrococcal nuclease production on Staphylococcus aureus Newman biofilms. Scientific Reports, 10(1), 12093. https://doi.org/10.1038/s41598-020-69084-x
Gabba, M., Frallicciardi, J., van ’t Klooster, J., Henderson, R., Syga, Ł., Mans, R., van Maris, A. J. A., & Poolman, B. (2020). Weak Acid Permeation in Synthetic Lipid Vesicles and Across the Yeast Plasma Membrane. Biophysical Journal, 118(2), 422-434. https://doi.org/10.1016/j.bpj.2019.11.3384
Keskin, D., Tromp, L., Mergel, O., Zu, G., Warszawik, E., van der Mei, H. C., & van Rijn, P. (2020). Highly Efficient Antimicrobial and Antifouling Surface Coatings with Triclosan-Loaded Nanogels. ACS Applied Materials & Interfaces, 12(52), 57721-57731. https://doi.org/10.1021/acsami.0c18172
Zu, G., Steinmüller, M., Keskin, D., van der Mei, H. C., Mergel, O., & van Rijn, P. (2020). Antimicrobial Nanogels with Nanoinjection Capabilities for Delivery of the Hydrophobic Antibacterial Agent Triclosan. ACS Applied Polymer Materials, 2(12), 5779-5789. https://doi.org/10.1021/acsapm.0c01031
Pohl, C., Polli, F., Schütze, T., Viggiano, A., Mózsik, L., Jung, S., de Vries, M., Bovenberg, R. A. L., Meyer, V., & Driessen, A. J. M. (2020). A Penicillium rubens platform strain for secondary metabolite production. Scientific Reports, 10(1), 7630. https://doi.org/10.1038/s41598-020-64893-6
Ma, C., Dong, J., Viviani, M., Tulini, I., Pontillo, N., Maity, S., Zhou, Y., Roos, W. H., Liu, K., Herrmann, A., & Portale, G. (2020). De novo rational design of a freestanding, supercharged polypeptide, proton-conducting membrane. Science Advances, 6(29), eabc0810. https://doi.org/doi:10.1126/sciadv.abc0810
Raineri, E. J. M., Yedavally, H., Salvati, A., & van Dijl, J. M. (2020). Time-resolved analysis of Staphylococcus aureus invading the endothelial barrier. Virulence, 11(1), 1623-1639. https://doi.org/10.1080/21505594.2020.1844418
Bispo, M., Anaya-Sanchez, A., Suhani, S., Raineri, E. J. M., López-Álvarez, M., Heuker, M., Szymański, W., Romero Pastrana, F., Buist, G., Horswill, A. R., Francis, K. P., van Dam, G. M., van Oosten, M., & van Dijl, J. M. (2020). Fighting Staphylococcus aureus infections with light and photoimmunoconjugates. JCI Insight, 5(22). https://doi.org/10.1172/jci.insight.139512
Vogel, J., Wakker-Havinga, M., Setroikromo, R., & Quax, W. J. (2020). Immobilized Acylase PvdQ Reduces Pseudomonas aeruginosa Biofilm Formation on PDMS Silicone [Original Research]. Frontiers in Chemistry, 8(54). https://doi.org/10.3389/fchem.2020.00054
Wu, Y., van der Mei, H. C., Busscher, H. J., & Ren, Y. (2020). Enhanced bacterial killing by vancomycin in staphylococcal biofilms disrupted by novel, DMMA-modified carbon dots depends on EPS production. Colloids and Surfaces B: Biointerfaces, 193, 111114. https://doi.org/https://doi.org/10.1016/j.colsurfb.2020.111114
Leinardi, R., Pavan, C., Yedavally, H., Tomatis, M., Salvati, A., & Turci, F. (2020). Cytotoxicity of fractured quartz on THP-1 human macrophages: role of the membranolytic activity of quartz and phagolysosome destabilization. Archives of Toxicology, 94(9), 2981-2995. https://doi.org/10.1007/s00204-020-02819-x
2019
da Cruz Campos, A. C., Cavallo, F. M., Andrade, N. L., van Dijl, J. M., Couto, N., Zrimec, J., Lo Ten Foe, J. R., Rosa, A. C. P., Damasco, P. V., Friedrich, A. W., Chlebowicz-Flissikowska, M. A., & Rossen, J. W. A. (2019). Determining the Virulence Properties of Escherichia coli ST131 Containing Bacteriocin-Encoding Plasmids Using Short- and Long-Read Sequencing and Comparing Them with Those of Other E. coli Lineages. Microorganisms, 7(11), 534. https://www.mdpi.com/2076-2607/7/11/534
Pols, T., Sikkema, H. R., Gaastra, B. F., Frallicciardi, J., Śmigiel, W. M., Singh, S., & Poolman, B. (2019). A synthetic metabolic network for physicochemical homeostasis. Nature Communications, 10(1), 4239. https://doi.org/10.1038/s41467-019-12287-2
Keskin, D., Mergel, O., van der Mei, H. C., Busscher, H. J., & van Rijn, P. (2019). Inhibiting Bacterial Adhesion by Mechanically Modulated Microgel Coatings. Biomacromolecules, 20(1), 243-253. https://doi.org/10.1021/acs.biomac.8b01378
Hoorens, M. W. H., Ourailidou, M. E., Rodat, T., van der Wouden, P. E., Kobauri, P., Kriegs, M., Peifer, C., Feringa, B. L., Dekker, F. J., & Szymanski, W. (2019). Light-controlled inhibition of BRAFV600E kinase. European Journal of Medicinal Chemistry, 179, 133-146. https://doi.org/10.1016/j.ejmech.2019.06.042
Mózsik, L., Büttel, Z., Bovenberg, R. A. L., Driessen, A. J. M., & Nygård, Y. (2019). Synthetic control devices for gene regulation in Penicillium chrysogenum. Microbial Cell Factories, 18(1), 203. https://doi.org/10.1186/s12934-019-1253-3
Zoller, S. D., Park, H. Y., Olafsen, T., Zamilpa, C., Burke, Z. D. C., Blumstein, G., Sheppard, W. L., Hamad, C. D., Hori, K. R., Tseng, J.-C., Czupryna, J., McMannus, C., Lee, J. T., Bispo, M., Romero Pastrana, F., Raineri, E. J. M., Miller, J. F., Miller, L. S., van Dijl, J. M., Francis, K. P., & Bernthal, N. M. (2019). Multimodal imaging guides surgical management in a preclinical spinal implant infection model. JCI Insight, 4(3). https://doi.org/10.1172/jci.insight.124813
Vignali, V., S. Miranda, B., Lodoso-Torrecilla, I., van Nisselroy, C. A. J., Hoogenberg, B.-J., Dantuma, S., Hollmann, F., de Vries, J. W., Warszawik, E. M., Fischer, R., Commandeur, U., & van Rijn, P. (2019). Biocatalytically induced surface modification of the tobacco mosaic virus and the bacteriophage M13 [10.1039/C8CC08042A]. Chemical Communications, 55(1), 51-54. https://doi.org/10.1039/C8CC08042A
Ma, C., Su, J., Sun, Y., Feng, Y., Shen, N., Li, B., Liang, Y., Yang, X., Wu, H., Zhang, H., Herrmann, A., Tanzi, R. E., Liu, K., & Zhang, C. (2019). Significant Upregulation of Alzheimer’s β-Amyloid Levels in a Living System Induced by Extracellular Elastin Polypeptides. Angewandte Chemie International Edition, 58(51), 18703-18709. https://doi.org/https://doi.org/10.1002/anie.201912399
Palma Medina, L. M., Becker, A.-K., Michalik, S., Yedavally, H., Raineri, E. J. M., Hildebrandt, P., Gesell Salazar, M., Surmann, K., Pförtner, H., Mekonnen, S. A., Salvati, A., Kaderali, L., van Dijl, J. M., & Völker, U. (2019). Metabolic Cross-talk Between Human Bronchial Epithelial Cells and Internalized Staphylococcus aureus as a Driver for Infection*. Molecular & Cellular Proteomics, 18(5), 892-908. https://doi.org/10.1074/mcp.RA118.001138
2018
Keskin, D., Mokabbar, T., Pei, Y., & Van Rijn, P. (2018). The Relationship between Bulk Silicone and Benzophenone-Initiated Hydrogel Coating Properties. Polymers, 10(5), 534. https://www.mdpi.com/2073-4360/10/5/534
Hansen, M. J., Feringa, F. M., Kobauri, P., Szymanski, W., Medema, R. H., & Feringa, B. L. (2018). Photoactivation of MDM2 Inhibitors: Controlling Protein–Protein Interaction with Light. Journal of the American Chemical Society, 140(41), 13136-13141. https://doi.org/10.1021/jacs.8b04870
2017
Utari, P. D., Vogel, J., & Quax, W. J. (2017). Deciphering Physiological Functions of AHL Quorum Quenching Acylases [Review]. Frontiers in Microbiology, 8(1123). https://doi.org/10.3389/fmicb.2017.01123